IBWS: IST Bioinformatics Web Services
Identifieur interne : 000B18 ( Main/Exploration ); précédent : 000B17; suivant : 000B19IBWS: IST Bioinformatics Web Services
Auteurs : Achille Zappa ; Mariangela Miele [Italie] ; Paolo Romano [Italie]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2010.
Descripteurs français
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- MESH :
English descriptors
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- MESH :
Abstract
The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130 000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. ‘SRS by WS (SWS)’, a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the ‘IST Bioinformatics Web Services (IBWS)’. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at
Url:
DOI: 10.1093/nar/gkq416
PubMed: 20484374
PubMed Central: 2896171
Affiliations:
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Le document en format XML
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Rosanna Benzi 10, I-16132, Genoa, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Bioinformatics, National Cancer Research Institute of Genoa, Largo Rosanna Benzi 10, I-16132, Genoa</wicri:regionArea><wicri:noRegion>Genoa</wicri:noRegion></affiliation></author><author><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" last="Romano">Paolo Romano</name><affiliation wicri:level="1"><nlm:aff id="AFF1">Bioinformatics, National Cancer Research Institute of Genoa, Largo Rosanna Benzi 10, I-16132, Genoa, Italy</nlm:aff><country xml:lang="fr">Italie</country><wicri:regionArea>Bioinformatics, National Cancer Research Institute of Genoa, Largo Rosanna Benzi 10, I-16132, Genoa</wicri:regionArea><wicri:noRegion>Genoa</wicri:noRegion></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Biological Specimen Banks</term><term>Catalogs as Topic</term><term>Computational Biology</term><term>Databases, Factual</term><term>Databases, Nucleic Acid</term><term>Genes, p53</term><term>Internet</term><term>Mutation</term><term>Software</term><term>User-Computer Interface</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données d'acides nucléiques</term><term>Bases de données factuelles</term><term>Biobanques</term><term>Biologie informatique</term><term>Catalogues comme sujet</term><term>Gènes p53</term><term>Interface utilisateur</term><term>Internet</term><term>Logiciel</term><term>Mutation</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Biological Specimen Banks</term><term>Catalogs as Topic</term><term>Computational Biology</term><term>Databases, Factual</term><term>Databases, Nucleic Acid</term><term>Genes, p53</term><term>Internet</term><term>Mutation</term><term>Software</term><term>User-Computer Interface</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données d'acides nucléiques</term><term>Bases de données factuelles</term><term>Biobanques</term><term>Biologie informatique</term><term>Catalogues comme sujet</term><term>Gènes p53</term><term>Interface utilisateur</term><term>Internet</term><term>Logiciel</term><term>Mutation</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130 000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. ‘SRS by WS (SWS)’, a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the ‘IST Bioinformatics Web Services (IBWS)’. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at <ext-link ext-link-type="uri" xlink:href="http://bioinformatics.istge.it/ibws/">http://bioinformatics.istge.it/ibws/</ext-link>. WSDL definitions can also be retrieved directly at <ext-link ext-link-type="uri" xlink:href="http://bioinformatics.istge.it:8080/axis/services">http://bioinformatics.istge.it:8080/axis/services</ext-link>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Romano, P" uniqKey="Romano P">P Romano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Romano, P" uniqKey="Romano P">P Romano</name></author><author><name sortKey="Kracht, M" uniqKey="Kracht M">M Kracht</name></author><author><name sortKey="Manniello, Ma" uniqKey="Manniello M">MA Manniello</name></author><author><name sortKey="Stegehuis, G" uniqKey="Stegehuis G">G Stegehuis</name></author><author><name sortKey="Fritze, D" uniqKey="Fritze D">D Fritze</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Petitjean, A" uniqKey="Petitjean A">A Petitjean</name></author><author><name sortKey="Mathe, E" uniqKey="Mathe E">E Mathe</name></author><author><name sortKey="Kato, S" uniqKey="Kato S">S Kato</name></author><author><name sortKey="Ishioka, C" uniqKey="Ishioka C">C Ishioka</name></author><author><name sortKey="Tavtigian, Sv" uniqKey="Tavtigian S">SV Tavtigian</name></author><author><name sortKey="Hainaut, P" uniqKey="Hainaut P">P Hainaut</name></author><author><name sortKey="Olivier, M" uniqKey="Olivier M">M Olivier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marra, D" uniqKey="Marra D">D Marra</name></author><author><name sortKey="Romano, P" uniqKey="Romano P">P Romano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Romano, P" uniqKey="Romano P">P Romano</name></author><author><name sortKey="Marra, D" uniqKey="Marra D">D Marra</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Senger, M" uniqKey="Senger M">M Senger</name></author><author><name sortKey="Rice, P" uniqKey="Rice P">P 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McWilliam</name></author><author><name sortKey="Laurent, T" uniqKey="Laurent T">T Laurent</name></author><author><name sortKey="Lopez, R" uniqKey="Lopez R">R Lopez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wassink, I" uniqKey="Wassink I">I Wassink</name></author><author><name sortKey="Rauwerda, H" uniqKey="Rauwerda H">H Rauwerda</name></author><author><name sortKey="Neerincx, Pbt" uniqKey="Neerincx P">PBT Neerincx</name></author><author><name sortKey="Van Der Vet, Pe" uniqKey="Van Der Vet P">PE van der Vet</name></author><author><name sortKey="Breit, Tm" uniqKey="Breit T">TM Breit</name></author><author><name sortKey="Leunissen, Jam" uniqKey="Leunissen J">JAM Leunissen</name></author><author><name sortKey="Nijholt, A" uniqKey="Nijholt A">A Nijholt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Urbanek, S" uniqKey="Urbanek S">S Urbanek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Romano, P" uniqKey="Romano P">P Romano</name></author><author><name sortKey="Manniello, A" uniqKey="Manniello A">A Manniello</name></author><author><name sortKey="Aresu, O" uniqKey="Aresu O">O Aresu</name></author><author><name sortKey="Armento, M" uniqKey="Armento M">M Armento</name></author><author><name sortKey="Cesaro, M" uniqKey="Cesaro M">M Cesaro</name></author><author><name sortKey="Parodi, B" uniqKey="Parodi B">B Parodi</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Italie</li></country></list><tree><noCountry><name sortKey="Zappa, Achille" sort="Zappa, Achille" uniqKey="Zappa A" first="Achille" last="Zappa">Achille Zappa</name></noCountry><country name="Italie"><noRegion><name sortKey="Miele, Mariangela" sort="Miele, Mariangela" uniqKey="Miele M" first="Mariangela" last="Miele">Mariangela Miele</name></noRegion><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" 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